
This page lists peer-reviewed publications, and technical reports, with BibTeX and EndNote files for citation and a feed for updates. Some of these papers can also be found in DBLP, PubMed, HubMed, Citeulike and Google Scholar.
- Robert Stevens, Alan Rector and Duncan Hull (2010) What is an ontology? Ontogenesis Peer-reviewed knowledge blog.
- Nico Adams, Paula de Matos, Adriano Dekker, Marcus Ennis, Janna Hastings, Kenneth Haug, Duncan Hull, Zara Josephs, Pablo Moreno, Steve Turner, Christoph Steinbeck (2009) Semantic access to chemistry data with the ChEBI ontology and web services, In Proceedings of Semantic Web Applications and Tools for the Life Scienes (SWAT4LS 2009), http://ceur-ws.org/Vol-559/
- Carole Goble, Robert Stevens, Duncan Hull, Katy Wolstencroft, Rodrigo Lopez (2008). Data curation + process curation = data integration + science, Briefings in Bioinformatics, DOI:10.1093/bib/bbn034, pmid:19060304
- Duncan Hull, Steve Pettifer and Douglas B. Kell (2008). Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web, PLoS Computational Biology, 4(10):e1000204+. DOI:10.1371/journal.pcbi.1000204, pubmed.gov/18974831, pmcid:2568856
- Duncan Hull (2008). GO faster ChEBI with Reasonable Biochemistry, Proceedings of OWL: Experiences and Directions (OWLED 2008). Fifth International Workshop, Karlsruhe, Germany, October 26-27, 2008. Available from Nature Precedings DOI:10101/npre.2008.2329.1
- Duncan Hull (2008). Semantic Matching of Bioinformatic Web Services, A thesis submitted to the University of Manchester for the degree of Doctor of Philosophy in the Faculty of Engineering and Physical Sciences, School of Computer Science.
- Tom Oinn, Peter Li, Douglas B. Kell, Carole Goble, Antoon Goderis, Mark Greenwood, Duncan Hull, Robert Stevens, Daniele Turi and Jun Zhao (2007) Taverna / myGrid: aligning a workflow system with the life sciences community In Workflows for e-Science: scientific workflows for Grids (isbn:9781846285196, isbn:1846285194, chapter DOI:10.1007/978-1-84628-757-2_19 and book DOI: 10.1007/978-1-84628-757-2) editors Ian J. Taylor, Ewa Deelman, Dennis B. Gannon and Matthew Shields), pp. 300-319. Springer, Guildford.
- Katy Wolstencroft, Pinar Alper, Duncan Hull, Chris Wroe, Phillip Lord, Robert Stevens and Carole Goble (2007) The myGrid Ontology: Bioinformatics Service Discovery in International Journal of Bioinformatics Research and Applications (IJBRA), volume 3, pages 303-325. pubmed.gov/18048194, DOI:10.1504/IJBRA.2007.015005
- Carole Goble, Katy Wolstencroft, Antoon Goderis, Duncan Hull, Jun Zhao, Pinar Alper, Phillip Lord, Chris Wroe, Khalid Belhajjame, Daniele Turi, Robert Stevens, Tom Oinn and David De Roure (2006) Knowledge Discovery for Biology with Taverna: Producing and Consuming Semantics in the Web of Science in Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences edited by Christopher J.O. Baker and Kei-Hoi Cheung (ISBN:0387484361 and chapter DOI:10.1007/978-0-387-48438-9_17 in book DOI:10.1007/978-0-387-48438-9) see book details
- Robert Stevens, Phillip Lord and Duncan Hull (2006) Using Distributed Data and Tools in Bioinformatics Applications in Bioinformatics – From Genomes to Therapies (Vol. III) edited by Thomas Lengauer (ISBN:3527312781)
- Duncan Hull, Evgeny Zolin, Andrey Bovykin, Ian Horrocks, Ulrike Sattler and Robert Stevens (2006) Deciding Semantic Matching of Stateless Services. In Proceedings of the Twenty-First National Conference on Artificial Intelligence (AAAI-06) and Eighteenth Innovative Applications of Artificial Intelligence (IAAI-06) Conference, pages 1319-1324, Boston, MA, USA, July 16-20, (ISBN:9781577352815) special track on AI and the Web
- Duncan Hull, Katy Wolstencroft, Robert Stevens, Carole Goble, Matthew Pocock, Peter Li and Tom Oinn (2006) Taverna: A tool for building and running workflows of services In Nucleic Acids Research34:W729-W732 (Web Server Issue), (ISSN:13624962) published by Oxford University Press. pubmed.gov/16845108 and DOI:10.1093/nar/gkl320
- Duncan Hull (2006) Data integration in myGrid with Taverna (abstract) in the First International Workshop on the Interoperability of Biological Information Resources (IBIR 2006), Tokyo, Japan, organised by the DNA Data Bank of Japan (DDBJ), National Institute of Genetics.
- Tom Oinn, Mark Greenwood, Matthew Addis, M. Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole Goble, Antoon Goderis, Duncan Hull, Darren Marvin, Peter Li, Phillip Lord, Matthew R. Pocock, Martin Senger, Robert Stevens, Anil Wipat and Chris Wroe (2006) Taverna: Lessons in creating a workflow environment for the life sciences in Concurrency and Computation: Practice and Experience 18: 1067-1100 (ISSN:15320626) DOI:10.1002/cpe.993
- Duncan Hull (2006) Biological Web Services, Technical Report, University of Manchester.
- Duncan Hull (2006) Description and classification of shims in myGrid, Technical Report, University of Manchester
- Duncan Hull, Robert Stevens and Phillip Lord (2005) Describing Web Services for user-oriented retrieval. Accepted paper and presentation in W3C Workshop on Frameworks for Semantics in Web Services, Digital Enterprise Research Institute (DERI), Innsbruck, Austria.
- Phillip Lord, Sean Bechhofer, Mark Wilkinson, Gary Schiltz, Damian Gessler, Duncan Hull, Carole Goble and Lincoln Stein (2004) Applying Semantic Web Services to bioinformatics: Experiences gained, lessons learnt. In Third International Semantic Web Conference (ISWC2004), Hiroshima, Japan. pages 350-364, full conference sproceedings DOI:10.1007/b102467.
- Phillip Lord, Pinar Alper, Chris Wroe, Robert Stevens, Carole Goble, Jun Zhao, Duncan Hull and Mark Greenwood (2004) The Semantic Web: Service discovery and provenance in myGrid. In W3C Workshop on Semantic Web for Life Sciences, Cambridge, Massachusetts USA.
- Duncan Hull, Robert Stevens, Phillip Lord, Chris Wroe and Carole Goble (2004) Treating shimantic web syndrome with ontologies. In First Advanced Knowledge Technologies workshop on Semantic Web Services (AKT-SWS04) KMi, The Open University, Milton Keynes, UK. (See Workshop proceedings CEUR-WS.org (ISSN:16130073) Volume 122 – AKT-SWS04)
- Duncan Hull, Robert Stevens, Phillip Lord, and Carole Goble (2004) Integrating bioinformatics resources using shims. In Twelfth International conference on Intelligent Systems for Molecular Biology (ISMB2004) Glasgow, UK.
- Duncan Hull (2003) Enabling Semantic Web Services in BioMOBY. Master of Science thesis, University of Manchester.
- Duncan Hull (1997) A user’s guide to The Carbon Cycle. Biological Sciences Review (ISBN:09535365), 10(1):10-13, 1997.
- Duncan Hull (1996) Signal transduction during embryogenesis in fucoid algae. Bachelor of Science dissertation, School of Biological Sciences, University of Manchester, 1996.
- Duncan Hull (1996) The regulation of Carbon Dioxide efflux from a sub-arctic heathland. Bachelor of Science project, School of Biological Sciences, University of Manchester, 1996.
[Creative Commons picture of British Museum Library by Matthijs Rouw]