O'Really?

November 24, 2009

Semantic Web Applications and Tools for the Life Sciences (SWAT4LS) 2009, Amsterdam

Snow in Amsterdam by Bas van GaalenLast Friday, the Centrum Wiskunde & Informatica (CWI) in Amsterdam hosted a workshop called Semantic Web Applications and Tools for the Life Sciences (SWAT4LS) 2009.

Following on from last year [1], the workshop proceedings will be published at ceur-ws.org and in a special issue of the Journal of Biomedical Semantics, but if you want to find out what happened in the meantime, take a look at the #swat4ls2009 hashtag on twitter. Twitter makes bloggers lazy (they blog less but tweet more), but thankfully Nico Adams has studiously blogged the workshop very extensively.

Disruptive Technologies Director (cool job title!) Anita de Waard from Elsevier was asking what were the conclusions of the workshop. So here is an incomplete summary: Roughly speaking, people agreed to disagree (again). Keynote speaker Barend Mons argued that redundant data should be eliminated through the use of “nano-publications” and micro-attribution in his entertaining but controversial keynote. Some people in the audience disagreed with this. Greg Tyrelle thinks that redundancy is a feature, not a bug, in the Web and we have to deal with it. Alan Ruttenberg argued that semantic web reasoners  are required to clean up and sanity check all the messy and noisy biological data but emphasised the importance of Computer Scientists learning to speak Biologists language.

The good thing about this workshop is its size: small, friendly but internationally attended. Thanks to M. Scott Marshall, Albert Burger, Adrian Paschke, Paolo Romano and Andrea Splendiani for organising another good workshop, hope to see you again next year (if not before).

References

  1. Burger, A., Romano, P., Paschke, A., & Splendiani, A. (2009). Semantic Web Applications and Tools for Life Sciences, 2008 – Introduction BMC Bioinformatics, 10 (Suppl 10) DOI: 10.1186/1471-2105-10-S10-S1 part of the special issue on SWAT4LS 2008

[CC-licensed picture of Amsterdam in the snow by Bas van Gaalen]

3 Comments »

  1. What did you think of my talk?

    Comment by Egon Willighagen — November 24, 2009 @ 10:37 am | Reply

  2. Hey Duncan,

    I enjoyed talking to you at SWAT4LS, as well as the whole day in general. We at UniProt hope to continue our involvement in these kinds of exchanges. Feel free to get in touch with me/us with ideas, questions, etc.

    Cheers,
    Thomas

    Comment by thomas11 — December 4, 2009 @ 8:43 am | Reply


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