June 15, 2009

Andrea Wiggins on little e-Science

Andrea WigginsAndrea Wiggins [1,2] from Syracuse University, New York is visiting Manchester this week and will be doing a seminar on “Little e-Science“, the details of which are below.

Date, time: 12 – 2pm on Thursday 18th June

Location: Atlas 1&2, Kilburn building

Title: Little eScience

Abstract: An interdisciplinary community of researchers has started to coalesce around the study of free/libre open source software (FLOSS) development. The research community is in many ways a reflection of the phenomenon of FLOSS practices in both social and technological respects, as many share the open source community’s values that support transparency and democratic participation. As community ties develop, new collaborations have spurred the creation of shared research resources: several repositories provide access to curated research-ready data, working paper repositories provide a means for disseminating early results, and a variety of analysis scripts and workflows connecting the data sets and literature are freely available. Despite these apparently favorable conditions for research collaboration, adoption of the tools and practices associated with eResearch has been slow as yet.

The key issues observed to date seem to stem from the challenges of pre-paradigmatic little science research. Researchers from software engineering, information systems, and even anthropology may examine the same construct, such as FLOSS project success, but will likely proceed from different epistemologies, utilize different data sources, identify different independent variables with varying operationalizations, and employ different research methodologies. In the decentralized and phenomenologically-driven FLOSS research community, creating and maintaining cyberinfrastructure [3] is a substantial effort for a small number of participants. In the little sciences, achieving critical mass of participation may be the most significant factor in creating a viable community of practice around eScience methods.

Update Slides are embedded below:


  1. Andrea Wiggins (2009) Social Life of Information: We Are Who We Link Andrea’s blog
  2. Andrea Wiggins, James Howison, & Kevin Crowston (2008). Social dynamics of FLOSS team communication across channels Open Source Development, Communities and Quality
  3. Lincoln Stein (2008). Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges Nature Reviews Genetics, 9 (9), 678-688 DOI: 10.1038/nrg2414

December 10, 2008

Congratulations Carole Goble, e-Scientist

Carole Goble wins first Jim Gray e-Science awardAt the Microsoft e-Science workshop in Indianapolis, earlier this week Carole Goble was awarded with the first Jim Gray 2008 e-Science award, pictured here collecting the prize from Tony Hey of Microsoft Research. You can read all about it in the Seattle Tech Report which says:

“As director of the U.K.’s myGrid project, Goble helped create Taverna, open source software that allows scientists to analyse complex data sets with a standard computer.”

It is very inspiring when colleagues win prizes and awards. Personally, I would not be here doing what I’m doing if it wasn’t for Carole and myGrid, and neither would many other people who work on (or have worked on) myGrid and related projects.

Carole, you are an inspiration to us all, congratulations! To celebrate your success, I’m off to commit some more of the seven deadly sins of bioinformatics [1]…


  1. Carole Goble The Seven Deadly Sins of Bioinformatics
  2. e-Science in Indianapolis: Carole Goble wins the 1st Jim Gray eScience Award
  3. Joseph Tartakoff British professor given first Jim Gray Award, Seattle Post-Intelligencer, Tech Report
  4. Todd Bishop UK prof receives Jim Gray award Tech Flash
  5. Savas Parastatidis Carole Goble as the first recipient of the “Jim Gray eScience Award”
  6. Microsoft Recognise Manchester e-Science Contribution
  7. Deborah Gage Microsoft creates award in the name of Jim Gray San Francisco Chronicle, The Tech Chronicles
  8. Microsoft New tools for Discovery on Display at e-Science workshop

December 2, 2008

SWAT4LS: The Semantic Web in Scotland

James Clerk MaxwellLast Friday, the UK National e-Science Centre in Edinburgh hosted a workhop, Semantic Web Applications and Tools for the Life Sciences (see SWAT4LS.org for the full details). Here are some incomplete and abbreviated notes from the workshop where there were some interesting people, paperware and software.

People and Paperware

70 people registered to attend SWAT4LS in total, many familiar names and faces, plus some new people I’ve never met before: (more…)

April 4, 2008

myScience: “social software” for scientists

myExperimentWith apologies to Jonathan Swift:

“Great sites have little sites upon their back to bite ’em
And little sites have lesser sites, and so ad infinitum…”

So what happened was, Carole Goble asked on the myExperiment mailing list, “is there a list of scientist social networking sites”? Here is first attempt at such a list (not comprehensive), you’ll have to decide for yourself which are the great, greater, little and lesser sites.

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