O'Really?

February 12, 2010

The 3rd OBO Foundry Workshop 2010, Cambridge, UK

Ultrawide Wellcome Trust Genome Campus, Cambridge by Tim NugentThe Open Biomedical Ontologies (OBO) [1] are a set of reference ontologies for describing all kinds of biomedical data shared in a centralised repository called The OBO Foundry. Every year, users and developers of these ontologies gather from around the globe for a workshop at the EBI near Cambridge, UK. Following on from the first workshop two years ago, the second workshop last year it’s already time for the third workshop on February 15th-16th. All the details and agenda are here if you’re interested. This workshop is possible thanks to sponsorship from the BBSRC funds for Workshop on Data Standards and the EU ELIXIR ‘Data Integration & Interoperability’ Package 7.

[Update: outcomes from the workshop are available here, along with a summary of discussion from Monday and a summary of discussion from Tuesday.]

References

  1. Smith, B., Ashburner, M., Rosse, C., Bard, J., Bug, W., Ceusters, W., Goldberg, L., Eilbeck, K., Ireland, A., Mungall, C., Leontis, N., Rocca-Serra, P., Ruttenberg, A., Sansone, S., Scheuermann, R., Shah, N., Whetzel, P., & Lewis, S. (2007). The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration Nature Biotechnology, 25 (11), 1251-1255 DOI: 10.1038/nbt1346

[Ultrawide panoramic picture of the Wellcome Trust Genome Campus by Tim Nugent, as featured on the cover of the EMBL-EBI Annual Scientific Report 2009. Making those pictures looks like a lot of fun.]

June 16, 2009

OBO Foundry workshop outcomes 2009

Filed under: conferences — Duncan Hull @ 4:28 pm
Tags: , , , ,

Haystack OWL by dullhunkWell I was going to blog about last weeks Open Biomedical Ontologies workshop, but Susanna-Assunta Sansone at the EBI has already done it via some very detailed minutes. See her notes for the:

  1. Overview
  2. Outcomes from day one
  3. Outcomes from day two

Thanks to the organisers of this workshop for hosting another well run event, I’m only sorry I had to miss the delicious looking dinner at Cotto in Cambridge (and entertaining company) on the last day…  Hope to see you again next year.

References

  1. Schober, D., Smith, B., Lewis, S., Kusnierczyk, W., Lomax, J., Mungall, C., Taylor, C., Rocca-Serra, P., & Sansone, S. (2009). Survey-based naming conventions for use in OBO Foundry ontology development BMC Bioinformatics, 10 (1) DOI: 10.1186/1471-2105-10-125

[CC-licensed Picture of Haystack OWL by dullhunk].

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