O'Really?

March 12, 2009

Defrosting the Digital Seminar

The Lecture by James M ThorneCasey Bergman suggested it, Jean-Marc Schwartz organised it, so now I’m going to do it: a seminar on our Defrosting the Digital Library paper as part of the Bioinformatics and Functional Genomics seminar series. Here is the abstract of the talk:

After centuries with little change, scientific libraries have recently experienced massive upheaval. From being almost entirely paper-based, most libraries are now almost completely digital. This information revolution has all happened in less than 20 years and has created many novel opportunities and threats for scientists, publishers and libraries.

Today, we are struggling with an embarrassing wealth of digital knowledge on the Web. Most scientists access this knowledge through some kind of digital library, however these places can be cold, impersonal, isolated, and inaccessible places. Many libraries are still clinging to obsolete models of identity, attribution, contribution, citation and publication.

Based on a review published in PLoS Computational Biology, http://pubmed.gov/18974831 this talk will discuss the current chilly state of digital libraries for biologists, chemists and informaticians, including PubMed and Google Scholar. We highlight problems and solutions to the coupling and decoupling of publication data and metadata, with a tool called http://www.citeulike.org. This software tool exploits the Web to make digital libraries “warmer”: more personal, sociable, integrated, and accessible places.

Finally issues that will help or hinder the continued warming of libraries in the future, particularly the accurate identity of authors and their publications, are briefly introduced. These are discussed in the context of the BBSRC funded REFINE project, at the National Centre for Text Mining (NaCTeM.ac.uk), which is linking biochemical pathway data with evidence for pathways from the PubMed database.

Date: Monday 16th March 2008, Time: 12.00 midday, Location: Michael Smith Building, Main lecture theatre, Faculty of Life Sciences, University of Manchester (number 71 on google map of the Manchester campus). Please come along if you are interested…

[CC licensed picture above, “The Lecture” at Speakers Corner by James M Thorne]

January 8, 2009

Data Integration in the Life Sciences (DILS 2009), Manchester

Cristiano Ronaldo by vuhlserData Integration in the Life Sciences (DILS 2009) is the sixth in an international workshop series that aims at fostering discussion, exchange, and innovation in research and development in the areas of data integration and data management for the life sciences. DILS 2004 in Leipzig, DILS 2005 in San Diego, DILS 2006 in Cambridge, DILS 2007 in Philadelphia, and DILS 2008 near Paris each attracted around 100 researchers from all over the world [1]. This year, DILS 2009 is being held in the People’s Republic of Manchester, UK.

Although the workshop isn’t until the 20th July,  the deadline for paper abstracts is the 13th February, so if you’re planning on coming, better hurry up (see picture, top right) with those submissions. As with last year, the workshop proceedings will be published by Lecture Notes in Computer Science (LNCS) from Springer.

References

  1. Fifth International Workshop, DILS 2008, Evry, France, June 25-27, 2008. Proceedings 10.1007/978-3-540-69828-9

[Gratuitous creative commons licensed picture of Manchester United Football Club player Cristiano Ronaldo by vuhlser. Must be time to buy a new Ferrari.]

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